euL1db
The European database of L1-HS retrotransposon insertions in humans

Home Background Search Browse Utilities Help FAQ Data Contact
Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

100 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip101 chr1 18320281 18320281 - L1-Ta germline . no 212 .
srip1601 chr1 72248542 72248542 - L1-Ta somatic validated no 212 NEGR1
srip1936 chr1 75773608 75773608 + L1-pre-Ta somatic validated no 212 SLC44A5
srip5650 chr1 187967332 187967332 + unknown germline . no 212 .
srip6298 chr1 197008509 197008509 - L1-Ta somatic validated no 212 F13B
srip6466 chr1 217604466 217604466 - L1-Ta somatic validated no 212 GPATCH2
srip8179 chr10 24098454 24098454 - L1-pre-Ta germline . no 212 KIAA1217
srip8621 chr10 25847992 25847992 - L1-pre-Ta somatic validated no 212 GPR158
srip8662 chr10 28305663 28305663 + L1-Ta germline . no 212 .
srip12021 chr11 425470 425470 + L1-Ta somatic validated no 212 ANO9
srip12671 chr11 21878476 21878476 + L1-Ta germline . no 212 .
srip17351 chr11 97868516 97868516 + L1-Ta germline . no 212 .
srip17471 chr11 103002009 103002009 - L1-Ta somatic validated no 212 DYNC2H1
srip18564 chr11 127975723 127975723 - L1-Ta germline . no 212 .
srip20330 chr12 17580925 17580925 - L1-Ta germline . no 212 .
srip20332 chr12 17732597 17732597 - L1-Ta germline . no 212 .
srip25319 chr12 99255420 99255420 + L1-Ta somatic validated no 212 ANKS1B
srip26502 chr12 127391309 127391309 - L1-Ta germline . no 212 .
srip28280 chr13 52648267 52648267 . L1-Ta germline . no 212 NEK5
srip31165 chr13 79583974 79583974 - L1-Ta germline . no 212 .
srip35280 chr14 30353447 30353447 - L1-Ta somatic validated no 212 PRKD1
srip35525 chr14 33985398 33985398 - L1-Ta germline . no 212 NPAS3
srip36374 chr14 40636981 40636981 - L1-Ta germline . no 212 .
srip36935 chr14 47126014 47126014 + L1-Ta germline . no 212 .
srip38357 chr14 79715515 79715515 + L1-Ta somatic validated no 212 NRXN3
srip39129 chr15 27560316 27560316 + L1-Ta germline . no 212 GABRG3
srip42674 chr15 94555459 94555459 - L1-Ta germline . no 212 .
srip43479 chr16 6082622 6082622 + L1-Ta germline . no 212 RBFOX1
srip45783 chr16 60245907 60245907 + L1-Ta germline . no 212 .
srip45892 chr16 62476456 62476456 + L1-Ta germline . no 212 .
srip47953 chr17 50636773 50636773 + L1-Ta germline . no 212 .
srip47957 chr17 51633355 51633355 - L1-Ta germline . no 212 .
srip48477 chr17 68590153 68590153 - L1-Ta germline . no 212 .
srip48668 chr18 2300813 2300813 + L1-Ta germline . no 212 .
srip50891 chr18 59157278 59157278 + L1-Ta somatic validated no 212 .
srip51174 chr18 62206640 62206640 - L1-Ta somatic validated no 212 .
srip53179 chr2 22823512 22823512 + L1-Ta germline . no 212 .
srip55602 chr2 72969471 72969471 - L1-Ta germline . no 212 EXOC6B
srip55920 chr2 80872272 80872272 - L1-Ta somatic validated no 212 CTNNA2
srip57507 chr2 125706155 125706155 - L1-Ta germline . no 212 .
srip57992 chr2 140855936 140855936 + L1-Ta germline . no 212 .
srip59697 chr2 165285743 165285743 + L1-Ta germline . no 212 .
srip60661 chr2 182994539 182994539 - L1-Ta germline . no 212 .
srip61269 chr2 203832471 203832471 + L1-Ta germline . no 212 ALS2CR8
srip61779 chr2 214798086 214798086 + L1-Ta somatic validated no 212 SPAG16
srip63109 chr20 7886354 7886354 + unknown germline . no 212 HAO1
srip63327 chr20 16256939 16256939 + L1-Ta somatic validated no 212 KIF16B
srip63940 chr20 22959388 22959388 + L1-Ta germline . no 212 .
srip65573 chr21 14628850 14628850 - L1-Ta germline . no 212 .
srip65578 chr21 16044891 16044891 + unknown germline . no 212 .
srip66547 chr21 24600002 24600002 + L1-pre-Ta germline . no 212 .
srip69711 chr3 716648 716648 + L1-Ta germline . no 212 .
srip69838 chr3 3743423 3743423 - L1-Ta germline . no 212 .
srip72358 chr3 55043347 55043347 + L1-Ta somatic validated no 212 CACNA2D3
srip73939 chr3 76114073 76114073 - L1-Ta germline . no 212 ROBO2
srip73944 chr3 77222566 77222566 + L1-Ta somatic validated no 212 ROBO2
srip76035 chr3 97013735 97013735 + L1-Ta germline . no 212 EPHA6
srip76875 chr3 121001284 121001284 + L1-Ta germline . no 212 STXBP5L
srip77545 chr3 132535107 132535107 + L1-Ta germline . no 212 NPHP3-AS1
srip78201 chr3 143941054 143941054 + unknown germline . no 212 .
srip83900 chr4 29603603 29603603 - L1-Ta germline . no 212 .
srip85164 chr4 55987713 55987713 - L1-Ta somatic validated no 212 KDR
srip85991 chr4 61529228 61529228 - L1-Ta germline . no 212 .
srip87088 chr4 71213902 71213902 + L1-Ta germline . no 212 .
srip87091 chr4 71216326 71216326 - L1-Ta germline . no 212 .
srip87753 chr4 85073047 85073047 + L1-Ta germline . no 212 .
srip88157 chr4 98127347 98127347 + L1-Ta germline . no 212 .
srip91238 chr4 129623110 129623110 + L1-Ta germline . no 212 .
srip93950 chr4 160771221 160771221 - L1-Ta germline . no 212 .
srip95144 chr4 185825524 185825524 - L1-Ta germline . no 212 .
srip96940 chr5 21912214 21912214 - L1-Ta somatic validated no 212 CDH12
srip96941 chr5 22328349 22328349 - L1-Ta somatic validated no 212 CDH12
srip97019 chr5 23496275 23496275 - L1-Ta germline . no 212 .
srip99756 chr5 83190413 83190413 - L1-Ta germline . no 212 .
srip105750 chr5 162131870 162131870 + L1-Ta germline . no 212 .
srip105789 chr5 163564852 163564852 + L1-Ta germline . no 212 .
srip109192 chr6 62013350 62013350 - L1-Ta germline . no 212 .
srip112302 chr6 93527100 93527100 - L1-Ta germline . no 212 .
srip112888 chr6 112686896 112686896 + L1-Ta germline . no 212 .
srip112890 chr6 112802921 112802921 + L1-Ta germline . no 212 .
srip113074 chr6 115634198 115634198 + L1-Ta germline . no 212 .
srip113175 chr6 122128508 122128508 + L1-Ta germline . no 212 .
srip113176 chr6 122212275 122212275 + L1-pre-Ta germline . no 212 .
srip115220 chr6 162060536 162060536 + L1-Ta somatic validated no 212 PARK2
srip116269 chr7 13786296 13786296 - L1-Ta germline . no 212 .
srip116807 chr7 35164983 35164983 + L1-Ta germline . no 212 LOC100420070
srip117196 chr7 48776941 48776941 + L1-Ta germline . no 212 .
srip117202 chr7 50227811 50227811 - L1-Ta germline . no 212 .
srip120947 chr7 97143568 97143568 + L1-Ta germline . no 212 .
srip122601 chr7 119573262 119573262 + L1-Ta germline . no 212 .
srip123140 chr7 137060936 137060936 + L1-Ta germline . no 212 .
srip124890 chr8 17190306 17190306 - L1-Ta germline . no 212 MTMR7
srip125667 chr8 32890233 32890233 + L1-Ta germline . no 212 .
srip128736 chr8 104931917 104931917 - L1-Ta germline . no 212 RIMS2
srip129815 chr8 127203147 127203147 + L1-Ta germline . no 212 .
srip130202 chr8 132703220 132703220 - L1-Ta germline . no 212 .
srip130460 chr8 139565918 139565918 + L1-Ta germline . no 212 .
srip131868 chr9 24881890 24881890 - L1-Ta germline . no 212 .
srip135999 chr9 118101462 118101462 - L1-Ta germline . no 212 DEC1
srip140117 chrX 102747043 102747043 - L1-Ta germline . no 212 .